I’ve recently been messing around with our Macbook Pro Retina (late 2013) as it won’t shut down anymore! If you choose to shut it down it closes down then just reboots. The battery life in standby also sucks, it can be fully charged at 100%, shut the lid, come back in 12 hours and it’ll be at 84%. I can’t remember if the problem was around before I upgraded from OS X Mavericks to Yosemite. I spent time on the phone with Apple tech support and they couldn’t sort the problem so booked me in at the local Apple Store. I had tried things like resetting the PRAM, verify the disk, repair disk permissions, reset the system management controller (SMC), wiped the drive and performed a fresh install and none of it solved the problem. Totally sounds like a software problem to me. By the way I have bootcamp installed with a windows partition. Windows can shutdown and power off the machine fine.
Took it to the Apple store for a ‘Genius’ to take a look. A few hours later I returned and they told me the Macbook looked like it had a little water damage, it’ll cost about £900 to change the motherboard, is it insured?!
I told them i’ve never spilt anything on it (which I haven’t) and that if it was a motherboard problem then why will windows shut the machine down correctly, sounds like a software problem to me?
They agreed and went back into their workshop to do a wipe and reinstall (which I had already done). 20 mins later, out they came, said it was shutting down correctly but was very slow at booting up for some reason, this could be down to the ‘water damage’ and sent me on my way!
I have since gone back to OSX Mavericks 10.9.5 and the machine shuts down correctly, battery standby life looks like it is acceptable but it’s still very slow at booting up and coming out of sleep mode.
I have 1 day left on the AppleCare warranty and a machine i’m not happy with. Thanks apple.
UPDATE 19/08/2015: I’m currently using OS X 10.11 Beta of El Capitan and it runs like a dream! Close the lid, come back a few days later and it will still be at 100%! It shuts down correctly, boots up quickly, everything works fine, no problems. Moral of the story… Yosemite sucks!